LIST OF PUBLICATIONS (by date):
Linked publications will redirect you to downloadable article PDFs.
Linked publications will redirect you to downloadable article PDFs.
- Hewitt RE, DeVan MR, Taylor DL, Mack MC. 2024. Root-associated fungi and acquisitive root traits facilitate permafrost nitrogen uptake from long-term experimentally warmed tundra. New Phytologist. 10.1111/nph.19521
- Taylor DL, Bhatnagar JM. 2024. Fungi in soil: a rich community with diverse functions. In Soil Microbiology, Ecology and Biochemistry pp 75-129. Elsevier.
- DeVan MR, Johnstone JF, Mack MC, Hollingsworth TN, Taylor DL. 2023. Host identity affects the response of mycorrhizal fungal communities to high severity fires in Alaskan boreal forests. Fungal Ecology. 62:101222.
- Cook K, Taylor DL. 2022. High diversity and low specificity of fungi associated with seedless epiphytic plants. Biotropica Online Early.
- Cook K, Taylor AD, Sharma J, Taylor DL. 2022. Inter-annual persistence of canopy fungi driven by abundance despite high spatial turnover. Microb Ecol Online Early
- Cook K, Sharma J, Taylor AD, Herriott I, Taylor DL. 2022. Epiphytic fungal communities vary by substrate type and at submetre spatial scales. Molecular Ecology. 31(6):1879-91.
- Hewitt RE, Day NJ, DeVan MR, Taylor DL. 2022. Wildfire impacts on root‐associated fungi and predicted plant–soil feedbacks in the boreal forest: Research progress and recommendations. Functional Ecology. Online Early.
- Kivlin SN, Mann MA, Lynn JS, Kazenel MR, Taylor DL, Rudgers JA. 2022. Grass species identity shapes communities of root and leaf fungi more than elevation. ISME Communications 17;2(1):1-1.
- Ladwig LM, Bell-Dereske LP, Bell KC, Collins SL, Natvig DO, Taylor DL. 2021. Soil fungal composition changes with shrub encroachment in the northern Chihuahuan Desert. Fungal Ecology 53: 101096
- Lyons KG, Mann M, Lenihan M, Roybal O, Carroll K, Reynoso K, Kivlin SN, Taylor DL, Rudgers JA. 2021. Culturable root endophyte communities shaped by both warming and plant host identify in the Rocky Mountains, USA. Fungal Ecology 49: 101002.
- Hewitt RE, Hollingsworth TN, Mack MC, Chapin FS, Rocha AV, Taylor DL. 2020. Limited overall impacts of ectomycorrhizal inoculation on recruitment of boreal trees into Arctic tundra following wildfire belie species-specific responses. PLOS One 15 (7), e0235932
- Hewitt RE, DeVan MR, Lagutina I, Genet H, McGuire AD, Taylor DL, Mack MC. 2020. Mycobiont contribution to tundra plant acquisition of permafrost-derived nitrogen. New Phytologist. Online Early.
- Kazenel MR, Kivlin SN, Taylor DL, Lynn JS, Rudgers JA. 2019. Altitudinal gradients fail to predict fungal symbiont responses to warming. Ecology 21:e02740.
- Haight JE, Nakasone KK, Laursen GA, Redhead SA, Taylor DL, Glaeser JA. 2019. Fomitopsis mounceae and F. schrenkii—two new species from North America in the F. pinicola complex. Mycologia 25:1-9.
- Kivlin SN, Kazenel MR, Lynn JS, Taylor DL, and Rudgers JA. 2019. Plant identity influences foliar fungal symbionts more than elevation in the Colorado Rocky Mountains. Microbial Ecology. Online early. DOI 10.1007/s00248-019-01336-4
- Hewitt RE, Taylor DL, Genet H, McGuire AD, Mack MC. 2019. Below-ground plant traits influence tundra plant acquisition of newly thawed permafrost nitrogen. Journal of Ecology 107: 950–962.
- Rebecca E. Hewitt RE, Taylor DL, Hollingsworth TN, Anderson CB, Pastur GM. 2018. Variable retention harvesting influences belowground plant-fungal interactions of Nothofagus pumilio seedlings in forests of southern Patagonia. PeerJ 6:e5008; DOI 10.7717/peerj.5008
- Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Kopylova E, Vázquez-Baeza Y, Janssen S, Morton JT, Mirarab S, Xu ZZ, Haroon MF, Kanbar J, Zhu Q, Gonzalez A, Song SE, Kosciolek T, Bokulich NA, Joshua Lefler J, Brislawn CJ, Humphrey GC, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Rob Knight R & The Earth Microbiome Project Consortium. 2017. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature. 551(7681): 457.
- Hewitt RE, Chapin FS, Hollingsworth TN, Taylor DL. 2017. The potential for mycobiont sharing between shrubs and seedlings to facilitate tree establishment after wildfire at Alaska arctic treeline. Molecular Ecology 26 (14): 3826–3838.
- Pec GJ, Justine Karst J, Taylor DL, Cigan PW, Erbilgin N, Cooke JEK, Simard SW, Cahill JF. 2017. Change in soil fungal community structure driven by a decline in ectomycorrhizal fungi following a mountain pine beetle (Dendroctonus ponderosae) outbreak. New Phytologist 213: 864-873.
- Leigh MB, Taylor DL, Neufeld JD. 2015. Clone libraries of ribosomal RNA gene sequences for characterization of microbial communities. In Springer Protocols Handbooks pp 1-28. Springer: Berlin.
- Taylor DL, McFarland JW, Hollingsworth TN, Lennon NJ, Nusbaum C, Ruess RW. 2014. A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning. Ecological Monographs. 84(1): 3-20.
- Hewitt RE, Bent E, Hollingsworth TN, Chapin III FS, Taylor DL. 2013. Resilience of Arctic mycorrhizal fungal communities after wildfire facilitated by resprouting shrubs. Ecoscience 20: 296-310.
- Kõljalg U, Nilsson H, Abarenkov K, Tedersoo L, Taylor A, Bahram M, Bates S, Bruns TD, Bengtsson-Palme J, O'Callaghan T, Douglas B, Drenkhan T, Eberhardt U, Dueñas M, Grebenc T, Griffith G, Hartmann M, Kirk P, Kohout P, Larsson E, Lindahl B, Luecking R, Martín M, Matheny B, Nguyen N, Niskanen T, Oja J, Peay K, Peintner U, Peterson M, Põldmaa K, Saag L, Saar I, Schüssler A, Scott J, Senés C, Smith M, Suija A, Taylor DL, Telleria M, Weiss M, Larsson K-H. 2013. Towards a unified paradigm for sequence-based identification of Fungi. New Phytologist. 22: 5271-5277.
- Hicks SL, Farrer EC, Taylor DL, Porras-Alfaro A, Suding KN, Sinsabaugh RL. 2013. Nitrogen deposition alters plant–fungal relationships: linking belowground dynamics to aboveground vegetation change. Molecular Ecology. Online Early.
- Geml J and Taylor DL. 2013. Biodiversity and molecular ecology of Russula and Lactarius in Alaska based on soil and sporocarp DNA sequences. Scripta Botanica Belgica 51: 132-145.
- Rosling A, Timling I, Taylor DL. 2013. Archaeorhizomycetes: Patterns of Distribution and Abundance in Soil. pp 333-349. In Genomics of Soil- and Plant-Associated Fungi, BA Horwitz, PK Mukherjee, M Mukherjee, and CP Kubicek (Eds.). Springer, Heidelberg Germany.
- Bates ST, Ahrendt S, Bik HM, Bruns TD, Caporaso JG, Cole J, Dwan M, Fierer N, Gu D, Houston S, Knight R, Leff J, Lewis C, Maestre JP, McDonald D, Nilsson RH, Porras-Alfaro A, Vincent Robert V, Schoch C, Scott J, Taylor DL, Parfrey LW, Stajich JE. 2013. Meeting Report: Fungal ITS Workshop (October 2012). Standards in Genomic Sciences 8(1).
- Horton TR, Hayward J, Tourtellot SG, Taylor DL. 2013. Uncommon ectomycorrhizal networks: richness and distribution of Alnus‐associating ectomycorrhizal fungal communities. New Phytologist 198(4): 978-980.
- Anderson MD, Taylor DL and Ruess, RW. 2013. Phylogeny and assemblage composition of Frankia inAlnus tenuifolia nodules across a primary successional sere in Interior Alaska. Molecular Ecology 22(14): 3864–3877.
- Pandey M, Sharma J, Taylor DL, Yadon V. 2013. A narrowly endemic photosynthetic orchid is non-specific in its mycorrhizal associations. Molecular Ecology 22(8): 2341–2354.
- Ruess R, Anderson M, McFarland J, Kielland K, Olson K, and Taylor DL. 2013. Ecosystem-level consequences of symbiont partnerships in a N2-Fixing shrub from Interior Alaskan floodplains. Ecological Monographs 83(2): 177-194.
- Glass DJ, Takebayashi N, Olson L, Taylor DL. 2013. Ribosomal RNA secondary structure modeling and its potential role in environmental DNA gene-authenticity validation: Insights from a highly novel fungal sequence in an Alaskan boreal forest. Molecular Phylogenetics and Evolution 67(1): 234–245.
- Taylor DL, Barrett C, Beatty G, Kennedy A, Klooster M, Hopkins S. 2013. Progress and prospects for the ecological genetics of mycoheterotrophs. pp 245-266 In Mycoheterotrophy: The Biology of Plants Living on Fungi. Vincent Merckx, ed. 356pp. Springer-Verlag.
- Timling I, Dahlberg A, Walker DA, Gardes M, Charcosset JY, Welker JM, Taylor DL. 2012. Distribution and drivers of ectomycorrhizal fungal communities across the North American Arctic. Ecosphere 3(11) art111.
- Timling I, Taylor DL. 2012. Peeking through a frosty window: Molecular insights into fungal diversity in arctic soil. Fungal Ecology 5(4): 419-429.
- Grubisha L, Levsen N, Olson MS, Taylor DL. 2012. Intercontinental divergence in the Populus-associated ectomycorrhizal fungus, Tricholoma populinum. New Phytologist 194(2): 548–560.
- McCormick MK, Taylor DL, Juhaszova K, Burnett RK, Whigham DF, O'Neill J. 2012. Limitations on orchid recruitment: not a simple picture. Molecular Ecology 21(6): 1511–1523.
- Geml J, Kauff F, Brochmann C, Lutzoni F, Laursen GA, Redhead, SA, Taylor DL. 2012. Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota). Fungal Biology 116(3): 388-400.
- Geml J, Timling I, Robinson CH, Lennon N, Nusbaum HC, Brochmann C, Noordeloos ME, Taylor DL. 2012. An arctic community of symbiotic fungi assembled by long-distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA. Journal of Biogeography 39(1): 74-88.
- Hopkins S, Taylor DL. 2011. Characterization of polymorphic microsatellite loci in the mycoheterotrophic orchidCorallorhiza maculata with cross-species amplification in Corallorhiza mertensiana. American Journal of Botany Primer Notes 98(9): e253-e255.
- Taylor DL, Houston S. 2011. A bioinformatics pipeline for sequence-based analyses of fungal biodiversity. Jin-Rong Xu and Burton H. Bluhm (eds.), Methods in Molecular Biology 722: 141-155. Springer, Clifton NJ.
- Bent E, Keikel P, Brenton R, Taylor DL. 2011. Ectomycorrhizal fungi are shared on the roots of boreal forest seedlings naturally regenerating after fire in interior Alaska, and different fungi are correlated with host growth responses. Applied and Environmental Microbiology 77(10): 3351-3359.
- Kennedy A, Taylor DL, Watson L. 2011. Mycorrhizal specificity in the fully mycoheterotrophicHexalectris Raf. (Orchidaceae: Epidendroideae). Molecular Ecology 20: 1303–1316.
- Supplemental Information - Chapin FS, McGuire AD, Ruess RW, Hollingsworth TN, Mack MC, Johnstone JF, Kasischke ES, Euskirchen ES, Jones J, Jorgenson MT, Kielland K, Kofinas GP, Turetsky MR, Yarie J, Lloyd AH, andTaylor DL. 2010. Resilience of Alaska’s boreal forest to climatic change. Canadian Journal of Forest Research 40(7): 1360–1370.
- Taylor DL, Herriott IC, Stone KE, McFarland JW, Booth MG, Leigh MB. 2010. Structure and resilience of fungal communities in Alaskan boreal forest soils. Canadian Journal of Forest Research40(7): 1288–1301.
- Geml J, Laursen GA, Herriott IC, McFarland JM, Booth MG, Lennon N, Nusbaum HC, Taylor DL. 2010. Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula Pers. (Russulales; Basidiomycota). New Phytologist 187(2): 494-507.
- Geml J, Kauff K, Brochmann C, Taylor DL. 2010. Surviving climate changes: high genetic diversity and transoceanic gene flow in two arctic-alpine lichens, Flavocetraria cucullata and F. nivalis(Parmeliaceae, Ascomycota). Journal of Biogeography 37(8): 1529–1542.
- Geml J, Kauff F, Laursen GA, Taylor DL. 2010. Genetic studies point to Beringia as a biodiversity hotspot for high-latitude fungi. Alaska Park Science 8(2): 37-41.
- Barrett CF, Freudensten JV, Taylor DL, Koljalg U. 2010. Rangewide analysis of fungal associations in the holomycotrophic Corallorhiza striata complex (Orchidaceae) reveals extreme specificity on ectomycorrhizal Tomentella (Thelephoraceae) across North America. American Journal of Botany 97 (3): 628-643
- Leigh MB, Neufeld J, Taylor DL. 2010. Clone libraries of ribosomal RNA gene sequences for characterization of bacterial and fungal communities. In Handbook of Hydrocarbon and Lipid Microbiology. Timmis KN, McGenity T, Meer JR, Lorenzo V, eds. pp 3969-3993. Springer: Berlin.
- Bent EL, Taylor DL. 2010. Direct amplification of DNA from fresh and preserved ectomycorrhizal root tips. Journal of Microbiological Methods 80 (2): 206-208.
- Geml J, Tulloss RE, Laursen GA, Sazanova NA, Taylor DL. 2010. Phylogeographic analyses of a boreal-temperate ectomycorrhizal basidiomycete, Amanita muscaria, suggest forest refugia in Alaska during the Last Glacial Maximum. In: Phylogeography and Conservation Biology. Habel, Jan Christian; Assmann, Thorsten (Eds.) Springer, 449 p.
- McCormick MK, Whigham DF, O’Neill JP, Becker JJ, Werner S, Rasmussen HN, Bruns TD, Taylor DL. 2009. Abundance and distribution of Corallorhiza odontorhiza reflects variations in climate and ectomycorrhizae. Ecological Monographs 79 (4): 619-635.
- Larsen T, Taylor DL, Leigh MB, O’Brien DM. 2009. Stable isotope fingerprinting: a novel method for identifying plant, fungal, or bacterial origins of amino acids. Ecology 90 (12): 3526-3535.
- Anderson MD, Ruess RR, Myrold DD, Taylor DL. 2009. Host species and habitat affect nodulation by specific Frankia genotypes in two species of Alnus in interior Alaska. Oecologia 160 (4): 619-630.
- Geml J, Laursen GA, Timling I, McFarland J, Booth MG, Lennon N, Nusbaum HC, Taylor DL. 2009. Molecular phylogenetic biodiversity assessment of arctic and boreal ectomycorrhizal Lactarius Pers. (Russulales; Basidiomycota) in Alaska, based on soil and sporocarp DNA. Molecular Ecology 18: 2213–2227.
- Geml J, Laursen GA, Taylor DL. 2008. Molecular diversity assessment of arctic and boreal Agaricustaxa from Alaska and Svalbard. Mycologia 100: 577-589.
- Geml J, Tulloss RE, Laursen GA, Sazanova NA, Taylor DL. 2008. Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete. Molecular Phylogenetics and Evolution 48 (2): 694-701.
- Tranchida Lombardo V, Hopkins SE, Selosse MA, Cozzolino S and Taylor DL. 2008. Isolation and characterization of new polymorphic microsatellite loci in the mixotrophic orchid Limodorum abortivumL. Swartz (Orchidaceae). Molecular Ecology Resources 8 (5): 1117-1120.
- Taylor DL, Booth MG, McFarland JW, Herriott IC, Lennon NJ, Nusbaum C & Marr TG. 2008. Increasing ecological inference from high throughput sequencing of fungi in the environment through a tagging approach. Molecular Ecology Resources 8 (4): 742 - 752.
- Supplemental Information - Taylor DL & McCormick MK. 2008. Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas. New Phytologist 177: 1020–1033.
- Bidartondo MI, et al. 2008. Preserving accuracy in GenBank. Science 319(5870): 1616.
- Geml J, Laursen GA, Nusbaum HC and Taylor DL. 2007. Two new species of Agaricus from the Subantarctic. Mycotaxon100: 193-208.
- Shefferson RP, Taylor DL, Weiß M, Garnica S, McCormick MK, Adams S, Gray HM, McFarland JW, Kull T, Tali K, Yukawa T, Kawahara T, Miyoshi K, and Lee Y-I. 2007. Mycorrhizae are phylogenetically conserved among lady’s slipper orchids. Evolution 61: 1380-1390.
- Taylor DL, Herriott IC, Long J and O’Neill K. 2007. TOPO TA is A-OK: a test of phylogenetic bias in fungal environmental clone library construction. Environmental Microbiology 9: 1329-1334.
- Supplemental Information - Simms EL, Taylor DL, Povich J, Shefferson RP, Sachs JL, Urbina M & Tausczik Y. 2006. An empirical test of partner choice mechanisms in a wild legume–rhizobium interaction. Proceedings of the Royal Society of London, Biological Sciences 273: 77-81.
- Geml J, Laursen GA, O’neill KO, Nusbaum HC, Taylor DL. 2006. Beringian origins and cryptic speciation events in the Fly Agaric (Amanita muscaria). Molecular Ecology 15: 225-239.
- Bruns TD, Baar J, Grogan P, Horton TR, Kretzer A, Redecker D, Tan J and Taylor DL. 2005. Natural history and community dynamics of ectomycorrhizal fungi following the Mt. Vision fire. pp33-40, In Lessens Learned from the October 1995 Mt. Vision Fire; CD ROM published by Points Reyes National Seashore.
- Shefferson RP, Weiss M, Kull T, Taylor DL. 2004. High specificity generally characterizes mycorrhizal association in rare lady’s slipper orchids, genus Cypripedium. Molecular Ecology 14: 613-626.
- Lilleskov EA, Bruns TD, Horton TR, Taylor DL & Grogan, P. 2004. Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities. FEMS Microbiology Ecology 49: 319-332.
- Taylor DL. 2004 Myco-heterotroph – fungus marriages - is fidelity over-rated? New Phytologist 163: 217-221.
- Taylor DL, Bruns TD, Hodges SA. 2004. Evidence for mycorrhizal races in a cheating orchid. Proceedings of the Royal Society of London, Biological Sciences 271: 35-43.
- Taylor DL, Bruns TD, Hodges SA. 2003. Divergence in mycorrhizal specialization with Hexalectris spicata (Orchidaceae), a nonphotosynthetic desert orchid. American Journal of Botany 90 (8): 1168-1179.
- Taylor DL, Bruns TD, Leake JR & Read DJ. 2002 Mycorrhizal specificity and function in myco-heterotrophic plants. In: The Ecology of Mycorrhizas. Ecological Studies vol. 157. Ian R. Sanders and Marcel van der Heijden, eds. pp 375-414. Berlin: Springer-Verlag.
- McKendrick SL, Leake JR, Taylor DL, Read DJ. 2002. Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirement for locally distributed Sebacinaspp. New Phytologist 154: 233-247
- Simms EL & Taylor DL. 2002. Partner choice in nitrogen fixation mutualisms of legumes and rhizobia. Integrative and Comparative Biology 42 (2): 369-380
- Bruns TD, Bidartondo MI, Taylor DL. 2002. Host specificity in ectomycorrhizal communities: what do the exceptions tell us? Integrative and Comparative Biology 42 (2): 352-359
- Kristiansen KA, Taylor DL, Kjøller R, Rasmussen HN, Rosendahl S. 2001. Identification of mycorrhizal fungi from single pelotons of Dactylorhiza majalis (Orchidaceae) using single-strand conformation polymorphism and mitochondrial ribosomal large subunit DNA sequences. Molecular Ecology 10: 2089-2093
- Taylor DL. 2000. A new dawn – the ecological genetics of mycorrhizal fungi. New Phytologist 147: 236-239.
- McKendrick SL, Leake JR, Taylor DL, & Read DJ. 2000. Symbiotic germination and development of myco-heterotrophic plants in nature: ontogeny of Corallorhiza trifida and characterization of its mycorrhizal fungi. New Phytologist 145: 523-537.
- Taylor DL & TD Bruns. 1999. Population, habitat and genetic correlates of mycorrhizal specialization in the 'cheating' orchids Corallorhiza maculata and C. mertensiana. Molecular Ecology 8: 1719-1732.
- Taylor DL & TD Bruns. 1999. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities. Molecular Ecology 8: 1837-1850.
- Bruns TD, Szaro TM, Gardes M, Cullings KW, Pan J, Taylor DL, Horton TR, Kretzer AM, Garbelotto M & Li Y. 1998. A sequence database for the identification of ectomycorrhizal Basidiomycetes by phylogenetic analysis. Molecular Ecology 7: 257-272.
- Taylor DL & Bruns TD. 1997. Independent, specialized invasions of ectomycorrhizal mutualism by two nonphotosynthetic orchids. Proceedings of the National Academy of Sciences USA 94: 4510-4515.